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Publications Journal Papers: ·
Yaohang Li, C. E. M. Strauss, A.
Gorin, “Hybrid Parallel Tempering and Simulated Annealing Method
– an Efficient Sampling Method in ab initio Protein Folding,” in
Press, Bioinformatics and Computational Biology for International Journal of
Computational Science, 2008. ·
Yaohang Li,
M. Mascagni, A. Gorin “A Decentralized Parallel Implementation for
Parallel Tempering Algorithm,” submitted to Parallel Computing, 2008. ·
Yaohang Li,
Y. D. Song, “An Adaptive and Trustworthy Software Testing Framework on
the Grid,” in Press, Journal of SupterComputing, 2008. ·
Yaohang Li,
D. Chen, X. Yuan, “Trustworthy Remote Compiling Service for Grid-based
Scientific Applications,” Journal of SuperComputing, 41(2):119-131, 2007. ·
Yaohang Li, “A
Bio-inspired Adaptive Job Scheduling Mechanism on the Grid,” International
Journal of Computer Science and Network Security, 6(3B): 1-7, 2006. ·
Yaohang Li, V. A. Protopopescu, ·
Yaohang Li, M. Mascagni, “Optimizing Dynamic Grid-based
Resources for Large Scale Monte Carlo Applications,” submitted for
publication in Mathematics and Computers in Simulation, 2005. ·
Yaohang Li, M. Mirugi, M. Mascagni, “Test the Rule
30 Cellular Automata Random Number Generator,” submitted for
publication in Mathematics and Computers in Simulation, 2005. ·
Yaohang Li, M. Mascagni, “Grid-based Quasi-Monte Carlo
Applications,” Monte Carlo Methods and Applications, 11:
39-55, 2005. ·
Yaohang Li, V. A. Protopopescu, A. Gorin, “Accelerated Simulated Tempering,”
Physics Letters A, 328(4): 274-283, 2004. ·
Yaohang Li, M. Mascagni, R. van Engelen, Q. Cai, “A
Grid Workflow-Based Monte Carlo Simulation Environment,”
Journal of Neural Parallel and Scientific Computations (NPSC), 12:439-455,
2004. ·
Yaohang Li, M. Mascagni, “Analysis of
Large-scale Grid-based Monte Carlo Applications,” International
Journal of High Performance Computing Applications (IJHPCA), 17(4):
369-382, 2003. (Jan. 2006, one of the 50 Most-Frequently-Read Articles in
International Journal of High Performance Computing Applications. http://hpc.sagepub.com/reports/mfr7.dtl) ·
Y. Zhang, Yaohang
Li, M. H. Peters, “Nonequilibrium,
Multiple-Time Scale Simulations of Ligand-Receptor Interactions in Structured
Protein Systems,” Proteins: Structure, Function, and Genetics, 52(3):
339-348, 2003.
Book Chapter: ·
Yaohang Li, M. Mascagni, “An Overview of Grid-based Conference Proceedings: ·
Yaohang Li, A. J. Bordner, Y. Tian,
X. Tao, A. Gorin, “Extensive Exploration of the Conformational Space
Improves Rosetta Results for Short Protein Domains”, accepted in 7th
Annual International Conference on Computational Systems Bioinformatics
(CSB08), Stanford, 2008. ·
Yaohang Li, A. Esterline, C. Baber,
K. Fuller, M. Burns, T. L. Hanson, T. LeFebvre, M. Schultz, M. Govett, P.
Hamer, A. Mysore, “A Sensor Information Framework for Integrating and
Orchestrating Distributed Sensor Services,” accepted in PDPTA’08,
Las Vegas, 2008. ·
A. Frazier, ·
Yaohang Li, M. Mascagni, A. Gorin
“Decentralized Replica Exchange Parallel Tempering: An Efficient
Implementation of Parallel Tempering using MPI and SPRNG,” Proceedings
of International Conference on Computational Science and Its Applications
(ICCSA), ·
Yaohang Li, J. Clark, K. Williams, Y. Song, “Efficient
Parallel Implementation of Evolutionary Markov Chain ·
Yaohang Li, T. Dong, Y. Song, “Using Grid Computing for
Distributed Software Testing,” Proceedings of PDPTA’06, ·
Yaohang Li, T. Dong, X. Zhang, Y. Song, X. Yuan, “Large-Scale Software Unit Testing on
the Grid,” Proceedings of IEEE International Conference on Granular
Computing, ·
Yaohang Li, J. Clark, X. Zhang, “Parallel Implementation of
the Accelerated Simulated Tempering Method,” Proceedings of 3rd
NPSC Conference, ·
X. Zhang, Yaohang
Li, A. Myklebust, “Hybrid
Optimization of Geometrically Trimmed NURBS Surfaces,”
Proceedings of ASME IMECE, ·
Yaohang Li, D. Chen, X. Yuan, Y. Yu, A. Esterline, “Secure Remote Compiling Service on the
Grid,” Proceedings of PDPTA’05, Las Vegas, 2005. ·
Yaohang Li, M. Mascagni, “A Bio-inspired Job Scheduling
Algorithm for Monte Carlo Applications on a Computational Grid,”
proceedings of 17th IMACS World Congress, Scientific Computation,
Applied Mathematics, and Simulation, Paris, France, 2005. ·
Yaohang Li, T. Dong, M. Bikdash, Y. Song, “Path Planning for Unmanned Vehicles
using Ant Colony Optimization on a Dynamic Voronoi Diagram,”
Proceedings of International Conference on Artificial Intelligence,
ICAI’05, Las Vegas, 2005. ·
X. Yuan, P.
Vega, H. Yu, Yaohang Li, “A Personal Software Process Tool for Eclipse
Environment”, Proceedings of International Conference on
Software Engineering Research and Practice (SERP'05), Las Vegas, 2005. ·
Yaohang Li, C. E. M. Strauss, A. Gorin, “Parallel Tempering in Rosetta Practice,”
Proceedings of International Conference on Bioinformatics and its
Applications, (ICBA’04), ·
Yaohang Li, M. Mascagni, “E-Science on the Grid:
Toward a Dynamic E-Scienc Automation with XML and Workflow Techniques,”
Proceedings of the 8th World Multi-Conference on Systemics,
Cybernetics, and Informatics, SCI’04, ·
Yaohang Li, Y. Song, “Bio-inspired Fault Tolerant and
Adaptive System Modeling and Simulation on the Grid,”
Proceedings of the International Conference on Computing, Communications and
Control Technologies, CCCT’04, ·
Yaohang Li, M. Mascagni, “e-Science Workflow on the Grid,”
Proceedings of the IADIS International Conference, e-Society 2004, ·
Yaohang Li, Q. Cai, Y. Li, “Toward a Dynamic
E-Commerce Automation with XML and Workflow Techniques on the Grid,”
Proceedings of IEEE SoutheastCon, 2004. ·
Yaohang Li, M. Mascagni, M. H. Peters, “Grid-based Nonequilibrium
Multiple-Time Scale Molecula Dynamics/Brownian Dynamics Simulations of
Ligand-Receptor Interactions in Structured Protein Systems,” Proceedings
of the First BioGrid Workshop at the 3rd IEEE/ACM Symposium Cluster Computing
and the Grid, Tokyo, 2003. ·
M. Mascagni, Yaohang
Li, “Computational
Infrastructure for Parallel, Distributed, and Grid-based Monte Carlo
Computations,” Proceedings of the Fourth International
Conference on Large-Scale Scientific Computations (LSSC'03), Sozopol,
Bulgaria, Lecture Notes in Computer Sciences, 2907: 39-52, 2003. ·
Yaohang Li, M. Mascagni, R. van Engelen “GCIMCA: A Globus and SPRNG Implementation of a
Grid Computing Infrastructure for Monte Carlo Applications,”
Proceeding of the International Multiconference in Computer Science and
Computer Engineering, PDPTA’03, 2003. ·
Yaohang Li, M. Mascagni, “Improving
Performance via Computational Replication on a Large-Scale Computational Grid,”
proceedings of the GP2PC at the IEEE/ACM International Symposium on
Cluster Computing and the Grid, IEEE/ACM CCGRID2003, Tokyo, 2003. ·
Yaohang Li, M. Mascagni, “Grid-based Monte Carlo
Applications,” Lecture Notes in Computer Science, 2536:13-24,
GRID2002, Grid Computing Third International Workshop/Conference, Baltimore,
2002. ·
Yaohang Li, A. Ali, “Neural Network in Business
Application”, Proceedings of IEMS’99 International
Conference, ·
Yaohang Li, M. Mascagni, “A Distributed Monte Carlo
Integration Tool”, Proceedings of the First Southern Symposium on
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